PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G141800.2
Common NameB456_007G141800, LOC105803156
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 304aa    MW: 31972.1 Da    PI: 6.8976
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G141800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.27.9e-10152196554
                         HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Gorai.007G141800.2 152 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 196
                         99***********************55......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-15145207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-15149207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-7152196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MANNPNESPA DDFLEQILGL SHFAPTETGL AGPDGRLSGN ATTAGAPMLL QLSSGGGTGH  60
IGAIGGGGGG AFHGQVFPLG LSLEQGKGGF LKPEEASGSS KRFRNEVVDG RAFSVKNVFH  120
GQPVPATVAA GPHPPAMRPR VRARRGQATD PHSIAERLRR ERIAERIRAL QELVPSVNKT  180
DRAAMLDEIV DYVKFLRLQV KVLSMSRLGA AGAVAPLVTD LPLSSVEDES GEGGRSQPAW  240
EKWSNDGTER QVAKLMEEDV GAAMQFLQSK ALCVMPISLA TAIYHTQSPD TSSVVKPETN  300
PPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490641.10.0PREDICTED: transcription factor UNE12 isoform X2
SwissprotO227681e-134UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0D2SJP90.0A0A0D2SJP9_G
STRINGPOPTR_0005s23930.11e-158(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-114bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]